Package uk.ac.gda.analysis.mscan

Class NormProc

java.lang.Object
uk.ac.gda.analysis.mscan.AbstractMalcolmSwmrProcessor<NXdetector>
uk.ac.gda.analysis.mscan.NormProc
All Implemented Interfaces:
Findable, MalcolmSwmrProcessor<NXdetector>
public class NormProc extends AbstractMalcolmSwmrProcessor<NXdetector>
Processor for Malcolm scans which calculates a background subtracted signal using ROIs and optionally normalise using values from transmission and attenuator scannables.

Adapted from beamline provided Jython script.

  • Constructor Details

    • NormProc

      public NormProc()

  • Method Details

    • initialise

      public void initialise(NexusScanInfo info, AbstractNexusObjectProvider<NXdetector> nexusProvider)
      Description copied from interface: MalcolmSwmrProcessor
      Prepare processor to receive data. For example create the lazy datasets and add to the NexusObjectWrapper
      Specified by:
      initialise in interface MalcolmSwmrProcessor<NXdetector>
      Overrides:
      initialise in class AbstractMalcolmSwmrProcessor<NXdetector>
      Parameters:
      info - the current scan info
      nexusProvider - Nexus provider to write datasets into

    • configureNexusProvider

      protected void configureNexusProvider(AbstractNexusObjectProvider<NXdetector> nexusObjectProvider)
      Specified by:
      configureNexusProvider in class AbstractMalcolmSwmrProcessor<NXdetector>

    • processFrame

      public void processFrame(org.eclipse.january.dataset.Dataset data, SliceFromSeriesMetadata metaSlice)
      Description copied from interface: MalcolmSwmrProcessor
      Perform processing for the data. E.g calculate a statistic and write to the NXdata
      Parameters:
      data - current detector frame to process
      metaSlice - metadata fror this frame

    • isEnabled

      public boolean isEnabled()
      Description copied from interface: MalcolmSwmrProcessor
      Check if processor is currently enabled
      Specified by:
      isEnabled in interface MalcolmSwmrProcessor<NXdetector>
      Overrides:
      isEnabled in class AbstractMalcolmSwmrProcessor<NXdetector>

    • getRoiProc

      public RoiProc getRoiProc()

    • setRoiProc

      public void setRoiProc(RoiProc roiProc)

    • getSignalRoiIndex

      public int getSignalRoiIndex()

    • setSignalRoiIndex

      public void setSignalRoiIndex(int signalRoiIndex)

    • getBackgroundRoiIndices

      public List<Integer> getBackgroundRoiIndices()

    • setBackgroundRoiIndices

      public void setBackgroundRoiIndices(List<Integer> backgroundRoiIndices)

    • isNorm

      public boolean isNorm()

    • setNorm

      public void setNorm(boolean norm)

    • getAttenuatorScannableName

      public String getAttenuatorScannableName()

    • setAttenuatorScannableName

      public void setAttenuatorScannableName(String attenuatorScannableName)

    • getAttenuatorScannable

      public Scannable getAttenuatorScannable()

    • setAttenuatorScannable

      public void setAttenuatorScannable(Scannable attenuatorScannable)

    • getTransmissionFieldName

      public String getTransmissionFieldName()

    • setTransmissionFieldName

      public void setTransmissionFieldName(String transmissionFieldName)

    • getScale

      public double getScale()

    • setScale

      public void setScale(double scale)

    • isBackgroundSubtractionEnabled

      public boolean isBackgroundSubtractionEnabled()

    • setBackgroundSubtractionEnabled

      public void setBackgroundSubtractionEnabled(boolean backgroundSubtractionEnabled)

    • setMonitorScannable

      public void setMonitorScannable(Scannable monitorScannable)